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Rice, Phoebe A.
One or more keywords matched the following properties of Rice, Phoebe A.
PropertyValue
keywords DNA recombination
overview How do mobile genetic elements jump? We use biochemistry, structural biology, and microbiology to get mechanistic answers. Projects include the SCCmec element of MRSA and the paradigmatic Mu transposase.
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Academic Article Protein-protein interactions directing resolvase site-specific recombination: a structure-function analysis.
Academic Article Retroviral integrases and their cousins.
Academic Article Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn.
Academic Article Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping.
Academic Article Holding damaged DNA together.
Academic Article Crystallization and preliminary X-ray study of the edema factor exotoxin adenylyl cyclase domain from Bacillus anthracis in the presence of its activator, calmodulin.
Academic Article Structural plasticity of the Flp-Holliday junction complex.
Academic Article New insight into site-specific recombination from Flp recombinase-DNA structures.
Academic Article Integration host factor: putting a twist on protein-DNA recognition.
Academic Article Visualizing Mu transposition: assembling the puzzle pieces.
Academic Article Flexible DNA bending in HU-DNA cocrystal structures.
Academic Article Structure-based analysis of HU-DNA binding.
Academic Article The crystal structure of the catalytic domain of the site-specific recombination enzyme gamma delta resolvase at 2.7 A resolution.
Academic Article Resolving integral questions in site-specific recombination.
Academic Article Mechanisms of site-specific recombination.
Academic Article Crystal structure of a Rad51 filament.
Academic Article Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb.
Academic Article IHF and HU: flexible architects of bent DNA.
Academic Article Protein binding has a large effect on radical mediated DNA damage.
Academic Article Inter-subunit interactions that coordinate Rad51's activities.
Academic Article Meeting report for mobile DNA 2010.
Academic Article Sin resolvase catalytic activity and oligomerization state are tightly coupled.
Academic Article Identification of a potential general acid/base in the reversible phosphoryl transfer reactions catalyzed by tyrosine recombinases: Flp H305.
Academic Article Amino acid residues in Rag1 crucial for DNA hairpin formation.
Academic Article Cooperativity mutants of the gamma delta resolvase identify an essential interdimer interaction.
Academic Article Regulatory mutations in Sin recombinase support a structure-based model of the synaptosome.
Academic Article Control of transposase activity within a transpososome by the configuration of the flanking DNA segment of the transposon.
Academic Article Regulation of Rad51 function by phosphorylation.
Academic Article Mapping the transition state for DNA bending by IHF.
Academic Article Structural basis for catalytic activation of a serine recombinase.
Academic Article The structure of the human AGT protein bound to DNA and its implications for damage detection.
Academic Article Crystal structures of the reduced, sulfenic acid, and mixed disulfide forms of SarZ, a redox active global regulator in Staphylococcus aureus.
Academic Article Structure of the LexA-DNA complex and implications for SOS box measurement.
Academic Article Moving DNA around: DNA transposition and retroviral integration.
Academic Article Ribosomal protein L7/L12 has a helix-turn-helix motif similar to that found in DNA-binding regulatory proteins.
Academic Article Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration.
Academic Article Binding and catalytic contributions to site recognition by flp recombinase.
Academic Article Architecture of a serine recombinase-DNA regulatory complex.
Academic Article The phage Mu transpososome core: DNA requirements for assembly and function.
Academic Article Refinement of gamma delta resolvase reveals a strikingly flexible molecule.
Academic Article The ยต transpososome structure sheds light on DDE recombinase evolution.
Academic Article Structure of the binding site for nonnucleoside inhibitors of the reverse transcriptase of human immunodeficiency virus type 1.
Academic Article Making DNA do a U-turn: IHF and related proteins.
Academic Article Model for a DNA-mediated synaptic complex suggested by crystal packing of gamma delta resolvase subunits.
Academic Article Comparative architecture of transposase and integrase complexes.
Academic Article The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis.
Academic Article Binding then bending: a mechanism for wrapping DNA.
Academic Article Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.
Academic Article Orchestrating serine resolvases.
Academic Article Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor.
Academic Article A helix-turn-strand structural motif common in alpha-beta proteins.
Academic Article Structural basis of asymmetry in the human immunodeficiency virus type 1 reverse transcriptase heterodimer.
Academic Article Two DNA polymerases: HIV reverse transcriptase and the Klenow fragment of Escherichia coli DNA polymerase I.
Academic Article Roles of two large serine recombinases in mobilizing the methicillin-resistance cassette SCCmec.
Academic Article A proposed mechanism for IS607-family serine transposases.
Academic Article A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore.
Academic Article Arginine as a general acid catalyst in serine recombinase-mediated DNA cleavage.
Academic Article Global analysis of ion dependence unveils hidden steps in DNA binding and bending by integration host factor.
Academic Article Serine Resolvases.
Academic Article Deciphering the Roles of Multicomponent Recognition Signals by the AAA+ Unfoldase ClpX.
Academic Article Crystal structure of the Varkud satellite ribozyme.
Academic Article The contrasting mechanisms of serum resistance of Neisseria gonorrhoeae and group B Neisseria meningitidis.
Academic Article Mobile genetic elements: in silico, in vitro, in vivo.
Academic Article Complement processing and immunoglobulin binding to Neisseria gonorrhoeae determined in vitro simulates in vivo effects.
Academic Article An essential saccharide binding domain for the mAb 2C7 established for Neisseria gonorrhoeae LOS by ES-MS and MSn.
Academic Article Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative.
Academic Article Target DNA bending by the Mu transpososome promotes careful transposition and prevents its reversal.
Academic Article Transposable phages, DNA reorganization and transfer.
Award or Honor Receipt Distinguished Educator in the Basic Sciences
Academic Article A new twist on V(D)J recombination.
Academic Article Two-step interrogation then recognition of DNA binding site by Integration Host Factor: an architectural DNA-bending protein.
Academic Article Static Kinks or Flexible Hinges: Multiple Conformations of Bent DNA Bound to Integration Host Factor Revealed by Fluorescence Lifetime Measurements.
Academic Article Snapshots of a molecular swivel in action.
Academic Article Crystal Structure of an Unusual Single-Stranded DNA-Binding Protein Encoded by Staphylococcal Cassette Chromosome Elements.
Academic Article Mu transpososome activity-profiling yields hyperactive MuA variants for highly efficient genetic and genome engineering.
Academic Article Characterizing Watson-Crick versus Hoogsteen Base Pairing in a DNA-Protein Complex Using Nuclear Magnetic Resonance and Site-Specifically 13C- and 15N-Labeled DNA.
Academic Article A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites.
Academic Article Structure of the P element transpososome reveals new twists on the DD(E/D) theme.
Academic Article ABHD10 is an S-depalmitoylase affecting redox homeostasis through peroxiredoxin-5.
Academic Article Comment on "RNA-guided DNA insertion with CRISPR-associated transposases".
Academic Article A novel DNA primase-helicase pair encoded by SCCmec elements.
Academic Article The protein-protein interactions required for assembly of the Tn3 resolution synapse.
Academic Article Structural basis for topological regulation of Tn3 resolvase.
Academic Article First full views of a CRISPR-guided system for gene insertion.
Concept Internal Ribosome Entry Sites
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Concept Poly-ADP-Ribose Binding Proteins
Concept Molecular Docking Simulation
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Concept CRISPR-Cas Systems
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Concept In Vitro Techniques
Academic Article Mobile genetic element-encoded putative DNA primases composed of A-family polymerase-SSB pairs.
Academic Article Crystal structure of a cap-independent translation enhancer RNA.
Academic Article Dynamic genetic adaptation of Bacteroides thetaiotaomicron during murine gut colonization.
Academic Article Guest editorial: Mobile genetic elements and horizontal gene transfer in prokaryotes.
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